5NCJ image
Entry Detail
PDB ID:
5NCJ
Keywords:
Title:
GriE in complex with manganese, succinate and (2S,4R)-5-hydroxyleucine
Biological Source:
PDB Version:
Deposition Date:
2017-03-05
Release Date:
2017-10-04
Method Details:
Experimental Method:
Resolution:
1.53 Å
R-Value Free:
0.17
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Leucine hydroxylase
Chain IDs:A, B
Chain Length:268
Number of Molecules:2
Biological Source:Streptomyces sp. DSM 40835
Primary Citation
Biosynthesis of methyl-proline containing griselimycins, natural products with anti-tuberculosis activity.
Chem Sci 8 7521 7527 (2017)
PMID: 29163906 DOI: 10.1039/c7sc02622f

Abstact

Griselimycins (GMs) are depsidecapeptides with superb anti-tuberculosis activity. They contain up to three (2S,4R)-4-methyl-prolines (4-MePro), of which one blocks oxidative degradation and increases metabolic stability in animal models. The natural congener with this substitution is only a minor component in fermentation cultures. We showed that this product can be significantly increased by feeding the reaction with 4-MePro and we investigated the molecular basis of 4-MePro biosynthesis and incorporation. We identified the GM biosynthetic gene cluster as encoding a nonribosomal peptide synthetase and a sub-operon for 4-MePro formation. Using heterologous expression, gene inactivation, and in vitro experiments, we showed that 4-MePro is generated by leucine hydroxylation, oxidation to an aldehyde, and ring closure with subsequent reduction. The crystal structures of the leucine hydroxylase GriE have been determined in complex with substrates and products, providing insight into the stereospecificity of the reaction.

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