5NAU image
Deposition Date 2017-02-28
Release Date 2018-05-02
Last Version Date 2024-10-23
Entry Detail
PDB ID:
5NAU
Keywords:
Title:
Torpedo californica acetylcholinesterase in complex with a non-chiral donepezil-like compound 20
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.25 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Acetylcholinesterase
Gene (Uniprot):ache
Chain IDs:A
Chain Length:543
Number of Molecules:1
Biological Source:Tetronarce californica
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
FUC B FUC -L
MAN C MAN -D
NAG B NAG -D
Ligand Molecules
Primary Citation
Kinetic and structural studies on the interactions of Torpedo californica acetylcholinesterase with two donepezil-like rigid analogues.
J Enzyme Inhib Med Chem 33 794 803 (2018)
PMID: 29651884 DOI: 10.1080/14756366.2018.1458030

Abstact

Acetylcholinesterase inhibitors were introduced for the symptomatic treatment of Alzheimer's disease (AD). Among the currently approved inhibitors, donepezil (DNP) is one of the most preferred choices in AD therapy. The X-ray crystal structures of Torpedo californica AChE in complex with two novel rigid DNP-like analogs, compounds 1 and 2, have been determined. Kinetic studies indicated that compounds 1 and 2 show a mixed-type inhibition against TcAChE, with Ki values of 11.12 ± 2.88 and 29.86 ± 1.12 nM, respectively. The DNP rigidification results in a likely entropy-enthalpy compensation with solvation effects contributing primarily to AChE binding affinity. Molecular docking evidenced the molecular basis for the binding of compounds 1 and 2 to the active site of β-secretase-1. Overall, these simplified DNP derivatives may represent new structural templates for the design of lead compounds for a more effective therapeutic strategy against AD by foreseeing a dual AChE and BACE-1 inhibitory activity.

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Primary Citation of related structures