5NA2 image
Deposition Date 2017-02-27
Release Date 2017-11-15
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5NA2
Keywords:
Title:
Crystal structure of the full-length Feline Immunodeficiency Virus capsid protein unveils original features
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.67 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Capsid protein (p24)
Gene (Uniprot):gag
Chain IDs:A, B
Chain Length:213
Number of Molecules:2
Biological Source:Feline immunodeficiency virus (isolate Petaluma)
Ligand Molecules
Primary Citation
Crystal Structure of the Full-Length Feline Immunodeficiency Virus Capsid Protein Shows an N-Terminal beta-Hairpin in the Absence of N-Terminal Proline.
Viruses 9 ? ? (2017)
PMID: 29120364 DOI: 10.3390/v9110335

Abstact

Feline immunodeficiency virus (FIV) is a member of the Retroviridae family. It is the causative agent of an acquired immunodeficiency syndrome (AIDS) in cats and wild felines. Its capsid protein (CA) drives the assembly of the viral particle, which is a critical step in the viral replication cycle. Here, the first atomic structure of full-length FIV CA to 1.67 Å resolution is determined. The crystallized protein exhibits an original tetrameric assembly, composed of dimers which are stabilized by an intermolecular disulfide bridge induced by the crystallogenesis conditions. The FIV CA displays a standard α-helical CA topology with two domains, separated by a linker shorter than other retroviral CAs. The β-hairpin motif at its amino terminal end, which interacts with nucleotides in HIV-1, is unusually long in FIV CA. Interestingly, this functional β-motif is formed in this construct in the absence of the conserved N-terminal proline. The FIV CA exhibits a cis Arg-Pro bond in the CypA-binding loop, which is absent in known structures of lentiviral CAs. This structure represents the first tri-dimensional structure of a functional, full-length FIV CA.

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Primary Citation of related structures