5N8Q image
Entry Detail
PDB ID:
5N8Q
Keywords:
Title:
Structure of truncated Norcoclaurine Synthase from Thalictrum flavum
Biological Source:
PDB Version:
Deposition Date:
2017-02-24
Release Date:
2017-09-27
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 2 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:S-norcoclaurine synthase
Chain IDs:A, B, C
Chain Length:165
Number of Molecules:3
Biological Source:Thalictrum flavum subsp. glaucum
Primary Citation
Structural Evidence for the Dopamine-First Mechanism of Norcoclaurine Synthase.
Biochemistry 56 5274 5277 (2017)
PMID: 28915025 DOI: 10.1021/acs.biochem.7b00769

Abstact

Norcoclaurine synthase (NCS) is a Pictet-Spenglerase that catalyzes the first key step in plant benzylisoquinoline alkaloid metabolism, a compound family that includes bioactive natural products such as morphine. The enzyme has also shown great potential as a biocatalyst for the formation of chiral isoquinolines. Here we present new high-resolution X-ray crystallography data describing Thalictrum flavum NCS bound to a mechanism-inspired ligand. The structure supports two key features of the NCS "dopamine-first" mechanism: the binding of dopamine catechol to Lys-122 and the position of the carbonyl substrate binding site at the active site entrance. The catalytically vital residue Glu-110 occupies a previously unobserved ligand-bound conformation that may be catalytically significant. The potential roles of inhibitory binding and alternative amino acid conformations in the mechanism have also been revealed. This work significantly advances our understanding of the NCS mechanism and will aid future efforts to engineer the substrate scope and catalytic properties of this useful biocatalyst.

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