5N5N image
Deposition Date 2017-02-14
Release Date 2017-11-01
Last Version Date 2024-05-15
Entry Detail
PDB ID:
5N5N
Title:
Cryo-EM structure of tsA201 cell alpha1B and betaI and betaIVb microtubules
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.20 Å
Aggregation State:
FILAMENT
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tubulin beta chain
Gene (Uniprot):TUBB
Chain IDs:A (auth: B), H (auth: A), I (auth: C), J (auth: D), K (auth: E), L (auth: F)
Chain Length:426
Number of Molecules:6
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tubulin alpha-1B chain
Gene (Uniprot):TUBA1B
Chain IDs:B (auth: K), C (auth: G), D (auth: H), E (auth: I), F (auth: J), G (auth: L)
Chain Length:437
Number of Molecules:6
Biological Source:Homo sapiens
Primary Citation
Tubulin isoform composition tunes microtubule dynamics.
Mol. Biol. Cell 28 3564 3572 (2017)
PMID: 29021343 DOI: 10.1091/mbc.E17-02-0124

Abstact

Microtubules polymerize and depolymerize stochastically, a behavior essential for cell division, motility, and differentiation. While many studies advanced our understanding of how microtubule-associated proteins tune microtubule dynamics in trans, we have yet to understand how tubulin genetic diversity regulates microtubule functions. The majority of in vitro dynamics studies are performed with tubulin purified from brain tissue. This preparation is not representative of tubulin found in many cell types. Here we report the 4.2-Å cryo-electron microscopy (cryo-EM) structure and in vitro dynamics parameters of α1B/βI+βIVb microtubules assembled from tubulin purified from a human embryonic kidney cell line with isoform composition characteristic of fibroblasts and many immortalized cell lines. We find that these microtubules grow faster and transition to depolymerization less frequently compared with brain microtubules. Cryo-EM reveals that the dynamic ends of α1B/βI+βIVb microtubules are less tapered and that these tubulin heterodimers display lower curvatures. Interestingly, analysis of EB1 distributions at dynamic ends suggests no differences in GTP cap sizes. Last, we show that the addition of recombinant α1A/βIII tubulin, a neuronal isotype overexpressed in many tumors, proportionally tunes the dynamics of α1B/βI+βIVb microtubules. Our study is an important step toward understanding how tubulin isoform composition tunes microtubule dynamics.

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