ISDA: 5N58

Deposition Date 2017-02-13

Release Date 2017-05-17

Last Version Date 2024-01-17

Entry Detail

PDB ID:

5N58

Keywords:

HYDROLASE

Title:

di-Zinc VIM-5 metallo-beta-lactamase in complex with (1-chloro-4-hydroxyisoquinoline-3-carbonyl)-D-tryptophan (Compound 1)

Biological Source:

Source Organism:

Klebsiella pneumoniae (Taxon ID: 573)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.96 Å

R-Value Free:

0.23

R-Value Work:

0.18

R-Value Observed:

0.19

Space Group:

P 21 21 21

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Class B metallo-beta-lactamase
Gene (Uniprot):blaVIM-5
Chain IDs:A, B
Chain Length:266
Number of Molecules:2
Biological Source:Klebsiella pneumoniae

UniProt ID:Q8GKX2 Pfam ID:PF00753

Ligand Molecules

93W

GOL

Primary Citation

Crystallographic analyses of isoquinoline complexes reveal a new mode of metallo-beta-lactamase inhibition.

Li, G.B, Brem, J, Lesniak, R, Abboud, M.I, Lohans, C.T, Clifton, I.J, Yang, S.Y, Jimenez-Castellanos, J.C, Avison, M.B, Spencer, J, McDonough, M.A, Schofield, C.J.Show

Chem. Commun. (Camb.) 53 5806 5809 (2017)

PMID: 28470248 DOI: 10.1039/c7cc02394d

Abstact

Crystallographic analyses of the VIM-5 metallo-β-lactamase (MBL) with isoquinoline inhibitors reveal non zinc ion binding modes. Comparison with other MBL-inhibitor structures directed addition of a zinc-binding thiol enabling identification of potent B1 MBL inhibitors. The inhibitors potentiate meropenem activity against clinical isolates harboring MBLs.

Legend

Protein

Chemical

Disease

Primary Citation of related structures