5N56 image
Deposition Date 2017-02-13
Release Date 2018-03-07
Last Version Date 2024-01-17
Entry Detail
PDB ID:
5N56
Keywords:
Title:
Staphylococcus aureus Mn-dependent superoxide dismutase SodA
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.07 Å
R-Value Free:
0.23
R-Value Work:
0.14
R-Value Observed:
0.15
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Superoxide dismutase [Mn/Fe] 1
Gene (Uniprot):sodA
Chain IDs:A, B
Chain Length:199
Number of Molecules:2
Biological Source:Staphylococcus aureus (strain bovine RF122 / ET3-1)
Ligand Molecules
Primary Citation
A charge polarization model for the metal-specific activity of superoxide dismutases.
Phys Chem Chem Phys 20 2363 2372 (2018)
PMID: 29308487 DOI: 10.1039/c7cp06829h

Abstact

The pathogenicity of Staphylococcus aureus is enhanced by having two superoxide dismutases (SODs): a Mn-specific SOD and another that can use either Mn or Fe. Using 94 GHz electron-nuclear double resonance (ENDOR) and electron double resonance detected (ELDOR)-NMR we show that, despite their different metal-specificities, their structural and electronic similarities extend down to their active-site 1H- and 14N-Mn(ii) hyperfine interactions. However these interactions, and hence the positions of these nuclei, are different in the inactive Mn-reconstituted Escherichia coli Fe-specific SOD. Density functional theory modelling attributes this to a different angular position of the E. coli H171 ligand. This likely disrupts the Mn-H171-E170' triad causing a shift in charge and in metal redox potential, leading to the loss of activity. This is supported by the correlated differences in the Mn(ii) zero-field interactions of the three SOD types and suggests that the triad is important for determining metal specific activity.

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Primary Citation of related structures