5N2B image
Deposition Date 2017-02-07
Release Date 2018-01-17
Last Version Date 2024-05-08
Entry Detail
PDB ID:
5N2B
Keywords:
Title:
The crystal structure of Burkholderia pseudomallei antigen and type I fimbria protein BPSL1626.
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Putative fimbrial subunit type 1
Gene (Uniprot):BPSL1626
Chain IDs:A, B
Chain Length:183
Number of Molecules:2
Biological Source:Burkholderia pseudomallei
Ligand Molecules
Primary Citation
BPSL1626: Reverse and Structural Vaccinology Reveal a Novel Candidate for Vaccine Design againstBurkholderia pseudomallei.
Antibodies 7 ? ? (2018)
PMID: 31544878 DOI: 10.3390/antib7030026

Abstact

Due to significant advances in computational biology, protein prediction, together with antigen and epitope design, have rapidly moved from conventional methods, based on experimental approaches, to in silico-based bioinformatics methods. In this context, we report a reverse vaccinology study that identified a panel of 104 candidate antigens from the Gram-negative bacterial pathogen Burkholderia pseudomallei, which is responsible for the disease melioidosis. B. pseudomallei can cause fatal sepsis in endemic populations in the tropical regions of the world and treatment with antibiotics is mostly ineffective. With the aim of identifying potential vaccine candidates, we report the experimental validation of predicted antigen and type I fimbrial subunit, BPSL1626, which we show is able to recognize and bind human antibodies from the sera of Burkholderia infected patients and to stimulate T-lymphocytes in vitro. The prerequisite for a melioidosis vaccine, in fact, is that both antibody- and cell-mediated immune responses must be triggered. In order to reveal potential antigenic regions of the protein that may aid immunogen re-design, we also report the crystal structure of BPSL1626 at 1.9 Å resolution on which structure-based epitope predictions were based. Overall, our data suggest that BPSL1626 and three epitope regions here-identified can represent viable candidates as potential antigenic molecules.

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Primary Citation of related structures