5MX8 image
Deposition Date 2017-01-21
Release Date 2017-04-05
Last Version Date 2024-01-17
Entry Detail
PDB ID:
5MX8
Keywords:
Title:
Crystal structure of H. pylori purine nucleoside phosphorylase from clinical isolate HpPNP-3
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 41 3 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Purine nucleoside phosphorylase DeoD-type
Chain IDs:A
Chain Length:233
Number of Molecules:1
Biological Source:Helicobacter pylori
Primary Citation
Structural characterization of purine nucleoside phosphorylase from human pathogen Helicobacter pylori.
Int. J. Biol. Macromol. 101 518 526 (2017)
PMID: 28336275 DOI: 10.1016/j.ijbiomac.2017.03.101

Abstact

Microaerophilic bacterium Helicobacer pylori is a well known human pathogen involved in the development of many diseases. Due to the evergrowing infection rate and increase of H. pylori antibiotic resistence, it is of utmost importance to find a new way to attack and eradicate H. pylori. The purine metabolism in H. pylori is solely dependant on the salvage pathway and one of the key enzymes in this pathway is purine nucleoside phosphorylase (PNP). In this timely context, we report here the basic biochemical and structural characterization of recombinant PNP from the H. pylori clinical isolate expressed in Escherichia coli. Structure of H. pylori PNP is typical for high molecular mass PNPs. However, its activity towards adenosine is very low, thus resembling more that of low molecular mass PNPs. Understanding the molecular mechanism of this key enzyme may lead to the development of new drug strategies and help in the eradication of H. pylori.

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