5MVV image
Deposition Date 2017-01-17
Release Date 2017-07-12
Last Version Date 2024-05-08
Entry Detail
PDB ID:
5MVV
Title:
Crystal structure of Plasmodium falciparum actin I- gelsolin segment 1 -CdATP complex
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.40 Å
R-Value Free:
0.15
R-Value Work:
0.12
R-Value Observed:
0.12
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Actin-1
Gene (Uniprot):ACT1
Chain IDs:A
Chain Length:378
Number of Molecules:1
Biological Source:Plasmodium falciparum (isolate 3D7)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Gelsolin
Gene (Uniprot):Gsn
Chain IDs:B (auth: G)
Chain Length:127
Number of Molecules:1
Biological Source:Mus musculus
Primary Citation
Rapid cadmium SAD phasing at the standard wavelength (1 angstrom ).
Acta Crystallogr D Struct Biol 73 581 590 (2017)
PMID: 28695858 DOI: 10.1107/S2059798317006970

Abstact

Cadmium ions can be effectively used to promote crystal growth and for experimental phasing. Here, the use of cadmium ions as a suitable anomalous scatterer at the standard wavelength of 1 Å is demonstrated. The structures of three different proteins were determined using cadmium single-wavelength anomalous dispersion (SAD) phasing. Owing to the strong anomalous signal, the structure of lysozyme could be automatically phased and built using a very low anomalous multiplicity (1.1) and low-completeness (77%) data set. Additionally, it is shown that cadmium ions can easily substitute divalent ions in ATP-divalent cation complexes. This property could be generally applied for phasing experiments of a wide range of nucleotide-binding proteins. Improvements in crystal growth and quality, good anomalous signal at standard wavelengths (i.e. no need to change photon energy) and rapid phasing and refinement using a single data set are benefits that should allow cadmium ions to be widely used for experimental phasing.

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Primary Citation of related structures
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