ISDA

Deposition Date 2017-01-12

Release Date 2017-03-29

Last Version Date 2024-11-13

Entry Detail

PDB ID:

5MU8

Keywords:

CYTOKINE

Title:

HUMAN TNF-ALPHA IN COMPLEX WITH JNJ525

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

3.00 Å

R-Value Free:

0.30

R-Value Work:

0.21

R-Value Observed:

0.21

Space Group:

P 1

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Tumor necrosis factor
Gene (Uniprot):TNF
Chain IDs:A, B, C, D, E (auth: F), F (auth: G), G (auth: H), H (auth: I), I (auth: J), J (auth: K), K (auth: L), L (auth: M), M (auth: N), N (auth: O), O (auth: P), P (auth: Q), Q (auth: R), R (auth: S), S (auth: T), T (auth: U), U (auth: V), V (auth: W), W (auth: X), X (auth: Y), Y (auth: Z), Z (auth: a), AA (auth: b), BA (auth: c), CA (auth: d), DA (auth: e), EA (auth: f), FA (auth: g), GA (auth: h), HA (auth: i), IA (auth: j), JA (auth: k), KA (auth: l), LA (auth: m), MA (auth: n), NA (auth: o), OA (auth: p), PA (auth: q), QA (auth: r), RA (auth: s), SA (auth: t), TA (auth: u), UA (auth: v), VA (auth: w)
Chain Length:159
Number of Molecules:48
Biological Source:Homo sapiens

UniProt ID:P01375 Pfam ID:PF00229

Ligand Molecules

JNI

Primary Citation

Structural Basis of Small-Molecule Aggregate Induced Inhibition of a Protein-Protein Interaction.

Blevitt, J.M, Hack, M.D, Herman, K.L, Jackson, P.F, Krawczuk, P.J, Lebsack, A.D, Liu, A.X, Mirzadegan, T, Nelen, M.I, Patrick, A.N, Steinbacher, S, Milla, M.E, Lumb, K.J.Show

J. Med. Chem. 60 3511 3517 (2017)

PMID: 28300404 DOI: 10.1021/acs.jmedchem.6b01836

Abstact

A prevalent observation in high-throughput screening and drug discovery programs is the inhibition of protein function by small-molecule compound aggregation. Here, we present the X-ray structural description of aggregation-based inhibition of a protein-protein interaction involving tumor necrosis factor α (TNFα). An ordered conglomerate of an aggregating small-molecule inhibitor (JNJ525) induces a quaternary structure switch of TNFα that inhibits the protein-protein interaction between TNFα and TNFα receptors. SPD-304 may employ a similar mechanism of inhibition.

Legend

Protein

Chemical

Disease

Primary Citation of related structures