5MQ7 image
Deposition Date 2016-12-20
Release Date 2017-03-22
Last Version Date 2024-05-15
Entry Detail
PDB ID:
5MQ7
Keywords:
Title:
Structure of AaLS-13
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
5.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:6,7-dimethyl-8-ribityllumazine synthase
Gene (Uniprot):ribH
Chain IDs:A (auth: 0A), B (auth: 0B), C (auth: 0C), D (auth: 0D), E (auth: 0E), F (auth: 0X), G (auth: 1A), H (auth: 1B), I (auth: 1C), J (auth: 1D), K (auth: 1E), L (auth: 1X), M (auth: 2A), N (auth: 2B), O (auth: 2C), P (auth: 2D), Q (auth: 2E), R (auth: 2X), S (auth: 3A), T (auth: 3B), U (auth: 3C), V (auth: 3D), W (auth: 3E), X (auth: 3X), Y (auth: 4A), Z (auth: 4B), AA (auth: 4C), BA (auth: 4D), CA (auth: 4E), DA (auth: 4X), EA (auth: 5A), FA (auth: 5B), GA (auth: 5C), HA (auth: 5D), IA (auth: 5E), JA (auth: 5X), KA (auth: 6A), LA (auth: 6B), MA (auth: 6C), NA (auth: 6D), OA (auth: 6E), PA (auth: 6X), QA (auth: 7A), RA (auth: 7B), SA (auth: 7C), TA (auth: 7D), UA (auth: 7E), VA (auth: 7X), WA (auth: 8A), XA (auth: 8B), YA (auth: 8C), ZA (auth: 8D), AB (auth: 8E), BB (auth: 8X), CB (auth: 9A), DB (auth: 9B), EB (auth: 9C), FB (auth: 9D), GB (auth: 9E), HB (auth: 9X), IB (auth: AA), JB (auth: AB), KB (auth: AC), LB (auth: AD), MB (auth: AE), NB (auth: AX), OB (auth: BA), PB (auth: BB), QB (auth: BC), RB (auth: BD), SB (auth: BE), TB (auth: BX), UB (auth: CA), VB (auth: CB), WB (auth: CC), XB (auth: CD), YB (auth: CE), ZB (auth: CX), AC (auth: DA), BC (auth: DB), CC (auth: DC), DC (auth: DD), EC (auth: DE), FC (auth: DX), GC (auth: EA), HC (auth: EB), IC (auth: EC), JC (auth: ED), KC (auth: EE), LC (auth: EX), MC (auth: FA), NC (auth: FB), OC (auth: FC), PC (auth: FD), QC (auth: FE), RC (auth: FX), SC (auth: GA), TC (auth: GB), UC (auth: GC), VC (auth: GD), WC (auth: GE), XC (auth: GX), YC (auth: HA), ZC (auth: HB), AD (auth: HC), BD (auth: HD), CD (auth: HE), DD (auth: HX), ED (auth: IA), FD (auth: IB), GD (auth: IC), HD (auth: ID), ID (auth: IE), JD (auth: IX), KD (auth: JA), LD (auth: JB), MD (auth: JC), ND (auth: JD), OD (auth: JE), PD (auth: JX), QD (auth: KA), RD (auth: KB), SD (auth: KC), TD (auth: KD), UD (auth: KE), VD (auth: KX), WD (auth: LA), XD (auth: LB), YD (auth: LC), ZD (auth: LD), AE (auth: LE), BE (auth: LX), CE (auth: MA), DE (auth: MB), EE (auth: MC), FE (auth: MD), GE (auth: ME), HE (auth: MX), IE (auth: NA), JE (auth: NB), KE (auth: NC), LE (auth: ND), ME (auth: NE), NE (auth: NX), OE (auth: OA), PE (auth: OB), QE (auth: OC), RE (auth: OD), SE (auth: OE), TE (auth: OX), UE (auth: PA), VE (auth: PB), WE (auth: PC), XE (auth: PD), YE (auth: PE), ZE (auth: PX), AF (auth: QA), BF (auth: QB), CF (auth: QC), DF (auth: QD), EF (auth: QE), FF (auth: QX), GF (auth: RA), HF (auth: RB), IF (auth: RC), JF (auth: RD), KF (auth: RE), LF (auth: RX), MF (auth: SA), NF (auth: SB), OF (auth: SC), PF (auth: SD), QF (auth: SE), RF (auth: SX), SF (auth: TA), TF (auth: TB), UF (auth: TC), VF (auth: TD), WF (auth: TE), XF (auth: TX), YF (auth: UA), ZF (auth: UB), AG (auth: UC), BG (auth: UD), CG (auth: UE), DG (auth: UX), EG (auth: VA), FG (auth: VB), GG (auth: VC), HG (auth: VD), IG (auth: VE), JG (auth: VX), KG (auth: WA), LG (auth: WB), MG (auth: WC), NG (auth: WD), OG (auth: WE), PG (auth: WX), QG (auth: XA), RG (auth: XB), SG (auth: XC), TG (auth: XD), UG (auth: XE), VG (auth: XX), WG (auth: YA), XG (auth: YB), YG (auth: YC), ZG (auth: YD), AH (auth: YE), BH (auth: YX), CH (auth: ZA), DH (auth: ZB), EH (auth: ZC), FH (auth: ZD), GH (auth: ZE), HH (auth: ZX), IH (auth: aA), JH (auth: aB), KH (auth: aC), LH (auth: aD), MH (auth: aE), NH (auth: aX), OH (auth: bA), PH (auth: bB), QH (auth: bC), RH (auth: bD), SH (auth: bE), TH (auth: bX), UH (auth: cA), VH (auth: cB), WH (auth: cC), XH (auth: cD), YH (auth: cE), ZH (auth: cX), AI (auth: dA), BI (auth: dB), CI (auth: dC), DI (auth: dD), EI (auth: dE), FI (auth: dX), GI (auth: eA), HI (auth: eB), II (auth: eC), JI (auth: eD), KI (auth: eE), LI (auth: eX), MI (auth: fA), NI (auth: fB), OI (auth: fC), PI (auth: fD), QI (auth: fE), RI (auth: fX), SI (auth: gA), TI (auth: gB), UI (auth: gC), VI (auth: gD), WI (auth: gE), XI (auth: gX), YI (auth: hA), ZI (auth: hB), AJ (auth: hC), BJ (auth: hD), CJ (auth: hE), DJ (auth: hX), EJ (auth: iA), FJ (auth: iB), GJ (auth: iC), HJ (auth: iD), IJ (auth: iE), JJ (auth: iX), KJ (auth: jA), LJ (auth: jB), MJ (auth: jC), NJ (auth: jD), OJ (auth: jE), PJ (auth: jX), QJ (auth: kA), RJ (auth: kB), SJ (auth: kC), TJ (auth: kD), UJ (auth: kE), VJ (auth: kX), WJ (auth: lA), XJ (auth: lB), YJ (auth: lC), ZJ (auth: lD), AK (auth: lE), BK (auth: lX), CK (auth: mA), DK (auth: mB), EK (auth: mC), FK (auth: mD), GK (auth: mE), HK (auth: mX), IK (auth: nA), JK (auth: nB), KK (auth: nC), LK (auth: nD), MK (auth: nE), NK (auth: nX), OK (auth: oA), PK (auth: oB), QK (auth: oC), RK (auth: oD), SK (auth: oE), TK (auth: oX), UK (auth: pA), VK (auth: pB), WK (auth: pC), XK (auth: pD), YK (auth: pE), ZK (auth: pX), AL (auth: qA), BL (auth: qB), CL (auth: qC), DL (auth: qD), EL (auth: qE), FL (auth: qX), GL (auth: rA), HL (auth: rB), IL (auth: rC), JL (auth: rD), KL (auth: rE), LL (auth: rX), ML (auth: sA), NL (auth: sB), OL (auth: sC), PL (auth: sD), QL (auth: sE), RL (auth: sX), SL (auth: tA), TL (auth: tB), UL (auth: tC), VL (auth: tD), WL (auth: tE), XL (auth: tX), YL (auth: uA), ZL (auth: uB), AM (auth: uC), BM (auth: uD), CM (auth: uE), DM (auth: uX), EM (auth: vA), FM (auth: vB), GM (auth: vC), HM (auth: vD), IM (auth: vE), JM (auth: vX), KM (auth: wA), LM (auth: wB), MM (auth: wC), NM (auth: wD), OM (auth: wE), PM (auth: wX), QM (auth: xA), RM (auth: xB), SM (auth: xC), TM (auth: xD), UM (auth: xE), VM (auth: xX)
Chain Length:161
Number of Molecules:360
Biological Source:Aquifex aeolicus
Ligand Molecules
Primary Citation
Structure and assembly of scalable porous protein cages.
Nat Commun 8 14663 14663 (2017)
PMID: 28281548 DOI: 10.1038/ncomms14663

Abstact

Proteins that self-assemble into regular shell-like polyhedra are useful, both in nature and in the laboratory, as molecular containers. Here we describe cryo-electron microscopy (EM) structures of two versatile encapsulation systems that exploit engineered electrostatic interactions for cargo loading. We show that increasing the number of negative charges on the lumenal surface of lumazine synthase, a protein that naturally assembles into a ∼1-MDa dodecahedron composed of 12 pentamers, induces stepwise expansion of the native protein shell, giving rise to thermostable ∼3-MDa and ∼6-MDa assemblies containing 180 and 360 subunits, respectively. Remarkably, these expanded particles assume unprecedented tetrahedrally and icosahedrally symmetric structures constructed entirely from pentameric units. Large keyhole-shaped pores in the shell, not present in the wild-type capsid, enable diffusion-limited encapsulation of complementarily charged guests. The structures of these supercharged assemblies demonstrate how programmed electrostatic effects can be effectively harnessed to tailor the architecture and properties of protein cages.

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Disease

Primary Citation of related structures