5MNV image
Entry Detail
PDB ID:
5MNV
Keywords:
Title:
Structural and functional characterization of OleP in complex with 6DEB in PEG
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2016-12-13
Release Date:
2018-02-28
Method Details:
Experimental Method:
Resolution:
2.97 Å
R-Value Free:
0.31
R-Value Work:
0.23
R-Value Observed:
0.24
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Cytochrome P-450
Chain IDs:A, B, C, D, E, F, G, H, I
Chain Length:407
Number of Molecules:9
Biological Source:Streptomyces antibioticus
Primary Citation
Substrate-induced conformational change in cytochrome P450 OleP.
FASEB J. 33 1787 1800 (2019)
PMID: 30207799 DOI: 10.1096/fj.201800450RR

Abstact

The regulation of cytochrome P450 activity is often achieved by structural transitions induced by substrate binding. We describe the conformational transition experienced upon binding by the P450 OleP, an epoxygenase involved in oleandomycin biosynthesis. OleP bound to the substrate analog 6DEB crystallized in 2 forms: one with an ensemble of open and closed conformations in the asymmetric unit and another with only the closed conformation. Characterization of OleP-6DEB binding kinetics, also using the P450 inhibitor clotrimazole, unveiled a complex binding mechanism that involves slow conformational rearrangement with the accumulation of a spectroscopically detectable intermediate where 6DEB is bound to open OleP. Data reported herein provide structural snapshots of key precatalytic steps in the OleP reaction and explain how structural rearrangements induced by substrate binding regulate activity.-Parisi, G., Montemiglio, L. C., Giuffrè, A., Macone, A., Scaglione, A., Cerutti, G., Exertier, C., Savino, C., Vallone, B. Substrate-induced conformational change in cytochrome P450 OleP.

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