5MNI image
Deposition Date 2016-12-13
Release Date 2017-03-01
Last Version Date 2024-05-01
Entry Detail
PDB ID:
5MNI
Keywords:
Title:
Escherichia coli AGPase mutant R130A apo form
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.09 Å
R-Value Free:
0.27
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glucose-1-phosphate adenylyltransferase
Gene (Uniprot):glgC
Mutagens:R130A
Chain IDs:A (auth: E), B (auth: G), C (auth: H), D (auth: F), E (auth: A), F (auth: B), G (auth: D), H (auth: C)
Chain Length:431
Number of Molecules:8
Biological Source:Escherichia coli K-12
Ligand Molecules
Primary Citation
Mechanistic insights into the allosteric regulation of bacterial ADP-glucose pyrophosphorylases.
J. Biol. Chem. 292 6255 6268 (2017)
PMID: 28223362 DOI: 10.1074/jbc.M116.773408

Abstact

ADP-glucose pyrophosphorylase (AGPase) controls bacterial glycogen and plant starch biosynthetic pathways, the most common carbon storage polysaccharides in nature. AGPase activity is allosterically regulated by a series of metabolites in the energetic flux within the cell. Very recently, we reported the first crystal structures of the paradigmatic AGPase from Escherichia coli (EcAGPase) in complex with its preferred physiological negative and positive allosteric regulators, adenosine 5'-monophosphate (AMP) and fructose 1,6-bisphosphate (FBP), respectively. However, understanding the molecular mechanism by which AMP and FBP allosterically modulates EcAGPase enzymatic activity still remains enigmatic. Here we found that single point mutations of key residues in the AMP-binding site decrease its inhibitory effect but also clearly abolish the overall AMP-mediated stabilization effect in wild-type EcAGPase. Single point mutations of key residues for FBP binding did not revert the AMP-mediated stabilization. Strikingly, an EcAGPase-R130A mutant displayed a dramatic increase in activity when compared with wild-type EcAGPase, and this increase correlated with a significant increment of glycogen content in vivo The crystal structure of EcAGPase-R130A revealed unprecedented conformational changes in structural elements involved in the allosteric signal transmission. Altogether, we propose a model in which the positive and negative energy reporters regulate AGPase catalytic activity via intra- and interprotomer cross-talk, with a "sensory motif" and two loops, RL1 and RL2, flanking the ATP-binding site playing a significant role. The information reported herein provides exciting possibilities for industrial/biotechnological applications.

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Primary Citation of related structures