5MLT image
Deposition Date 2016-12-07
Release Date 2017-01-11
Last Version Date 2024-10-23
Entry Detail
PDB ID:
5MLT
Title:
Structural characterization of a carbohydrate substrate binding protein from Streptococcus pneumoniae
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.61 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ABC transporter, substrate-binding protein
Gene (Uniprot):SP_0092
Chain IDs:A
Chain Length:455
Number of Molecules:1
Biological Source:Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Ligand Molecules
Primary Citation
Structural characterization of the Streptococcus pneumoniae carbohydrate substrate-binding protein SP0092.
Acta Crystallogr F Struct Biol Commun 73 54 61 (2017)
PMID: 28045395 DOI: 10.1107/S2053230X16020252

Abstact

Streptococcus pneumoniae is an opportunistic respiratory pathogen that remains a major cause of morbidity and mortality globally, with infants and the elderly at the highest risk. S. pneumoniae relies entirely on carbohydrates as a source of carbon and dedicates a third of all uptake systems to carbohydrate import. The structure of the carbohydrate-free substrate-binding protein SP0092 at 1.61 Å resolution reveals it to belong to the newly proposed subclass G of substrate-binding proteins, with a ligand-binding pocket that is large enough to accommodate complex oligosaccharides. SP0092 is a dimer in solution and the crystal structure reveals a domain-swapped dimer with the monomer subunits in a closed conformation but in the absence of carbohydrate ligand. This closed conformation may be induced by dimer formation and could be used as a mechanism to regulate carbohydrate uptake.

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Chemical

Disease

Primary Citation of related structures
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