5MJS image
Deposition Date 2016-12-01
Release Date 2017-12-20
Last Version Date 2025-03-19
Entry Detail
PDB ID:
5MJS
Title:
S. pombe microtubule copolymerized with GTP and Mal3-143
Biological Source:
Method Details:
Experimental Method:
Resolution:
4.60 Å
Aggregation State:
HELICAL ARRAY
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tubulin beta chain
Gene (Uniprot):nda3
Chain IDs:A, G (auth: J), H (auth: B), I (auth: C)
Chain Length:429
Number of Molecules:4
Biological Source:Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Microtubule integrity protein mal3
Gene (Uniprot):mal3
Chain IDs:B (auth: D)
Chain Length:143
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tubulin alpha-1 chain
Gene (Uniprot):nda2
Chain IDs:C (auth: E), D (auth: F), E (auth: G), F (auth: H)
Chain Length:444
Number of Molecules:4
Biological Source:Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Primary Citation
Nucleotide- and Mal3-dependent changes in fission yeast microtubules suggest a structural plasticity view of dynamics.
Nat Commun 8 2110 2110 (2017)
PMID: 29235477 DOI: 10.1038/s41467-017-02241-5

Abstact

Using cryo-electron microscopy, we characterize the architecture of microtubules assembled from Schizosaccharomyces pombe tubulin, in the presence and absence of their regulatory partner Mal3. Cryo-electron tomography reveals that microtubules assembled from S. pombe tubulin have predominantly B-lattice interprotofilament contacts, with protofilaments skewed around the microtubule axis. Copolymerization with Mal3 favors 13 protofilament microtubules with reduced protofilament skew, indicating that Mal3 adjusts interprotofilament interfaces. A 4.6-Å resolution structure of microtubule-bound Mal3 shows that Mal3 makes a distinctive footprint on the S. pombe microtubule lattice and that unlike mammalian microtubules, S. pombe microtubules do not show the longitudinal lattice compaction associated with EB protein binding and GTP hydrolysis. Our results firmly support a structural plasticity view of microtubule dynamics in which microtubule lattice conformation is sensitive to a variety of effectors and differently so for different tubulins.

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