5MI7 image
Entry Detail
PDB ID:
5MI7
Keywords:
Title:
BtGH84 mutant with covalent modification by MA4 in complex with PUGNAc
Biological Source:
PDB Version:
Deposition Date:
2016-11-27
Release Date:
2017-11-01
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:O-GlcNAcase BT_4395
Mutations:C420S, Y550C, C654S
Chain IDs:A
Chain Length:727
Number of Molecules:1
Biological Source:Bacteroides thetaiotaomicron VPI-5482
Primary Citation
Increase of enzyme activity through specific covalent modification with fragments.
Chem Sci 8 7772 7779 (2017)
PMID: 29163914 DOI: 10.1039/c7sc01966a

Abstact

Modulation of enzyme activity is a powerful means of probing cellular function and can be exploited for diverse applications. Here, we explore a method of enzyme activation where covalent tethering of a small molecule to an enzyme can increase catalytic activity (kcat/KM) up to 35-fold. Using a bacterial glycoside hydrolase, BtGH84, we demonstrate how small molecule "fragments", identified as activators in free solution, can be covalently tethered to the protein using Michael-addition chemistry. We show how tethering generates a constitutively-activated enzyme-fragment conjugate, which displays both improved catalytic efficiency and increased susceptibility to certain inhibitor classes. Structure guided modifications of the tethered fragment demonstrate how specific interactions between the fragment and the enzyme influence the extent of activation. This work suggests that a similar approach may be used to modulate the activity of enzymes such as to improve catalytic efficiency or increase inhibitor susceptibility.

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