5MGZ image
Deposition Date 2016-11-22
Release Date 2017-01-18
Last Version Date 2024-05-08
Entry Detail
PDB ID:
5MGZ
Keywords:
Title:
Streptomyces Spheroides NovO (8-demethylnovbiocic acid methyltransferase) with SAH
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:8-demethylnovobiocic acid C(8)-methyltransferase
Gene (Uniprot):novO
Chain IDs:A, B
Chain Length:236
Number of Molecules:2
Biological Source:Streptomyces niveus
Primary Citation
Structural and Functional Basis of C-Methylation of Coumarin Scaffolds by NovO.
ACS Chem. Biol. 12 374 379 (2017)
PMID: 28068060 DOI: 10.1021/acschembio.6b01053

Abstact

C-methylation of aromatic small molecules by C-methyltransferases (C-MTs) is an important biological transformation that involves C-C bond formation using S-adenosyl-l-methionine (SAM) as the methyl donor. Here, two advances in the mechanistic understanding of C-methylation of the 8-position of coumarin substrates catalyzed by the C-MT NovO from Streptomyces spheroides are described. First, a crystal structure of NovO reveals the Arg116-Asn117 and His120-Arg121 motifs are essential for coumarin substrate binding. Second, the active-site His120 is responsible for deprotonation of the phenolic 7-hydroxyl group on the coumarin substrate, activating the rate-determining methyl transfer step from SAM. This work expands our mechanistic knowledge of C-MTs, which could be used in the downstream development of engineered biocatalysts for small molecule C-alkylations.

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Primary Citation of related structures