5MG8 image
Deposition Date 2016-11-21
Release Date 2017-02-08
Last Version Date 2024-05-08
Entry Detail
PDB ID:
5MG8
Keywords:
Title:
Crystal structure of the S.pombe Smc5/6 hinge domain
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.75 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Structural maintenance of chromosomes protein 5
Gene (Uniprot):smc5
Chain IDs:A, C
Chain Length:347
Number of Molecules:2
Biological Source:Schizosaccharomyces pombe
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Structural maintenance of chromosomes protein 6
Gene (Uniprot):smc6
Chain IDs:B, D
Chain Length:294
Number of Molecules:2
Biological Source:Schizosaccharomyces pombe
Primary Citation
Specialized interfaces of Smc5/6 control hinge stability and DNA association.
Nat Commun 8 14011 14011 (2017)
PMID: 28134253 DOI: 10.1038/ncomms14011

Abstact

The Structural Maintenance of Chromosomes (SMC) complexes: cohesin, condensin and Smc5/6 are involved in the organization of higher-order chromosome structure-which is essential for accurate chromosome duplication and segregation. Each complex is scaffolded by a specific SMC protein dimer (heterodimer in eukaryotes) held together via their hinge domains. Here we show that the Smc5/6-hinge, like those of cohesin and condensin, also forms a toroidal structure but with distinctive subunit interfaces absent from the other SMC complexes; an unusual 'molecular latch' and a functional 'hub'. Defined mutations in these interfaces cause severe phenotypic effects with sensitivity to DNA-damaging agents in fission yeast and reduced viability in human cells. We show that the Smc5/6-hinge complex binds preferentially to ssDNA and that this interaction is affected by both 'latch' and 'hub' mutations, suggesting a key role for these unique features in controlling DNA association by the Smc5/6 complex.

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