5MG5 image
Entry Detail
PDB ID:
5MG5
Keywords:
Title:
A multi-component acyltransferase PhlABC from Pseudomonas protegens soaked with the monoacetylphloroglucinol (MAPG)
Biological Source:
PDB Version:
Deposition Date:
2016-11-20
Release Date:
2017-12-20
Method Details:
Experimental Method:
Resolution:
3.44 Å
R-Value Free:
0.22
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Hydroxymethylglutaryl-CoA synthase
Chain IDs:A, D, G, J, M, P, S, V
Chain Length:362
Number of Molecules:8
Biological Source:Pseudomonas protegens
Polymer Type:polypeptide(L)
Description:2,4-diacetylphloroglucinol biosynthesis protein
Chain IDs:B, E, H, K, N, Q, T, W
Chain Length:146
Number of Molecules:8
Biological Source:Pseudomonas protegens
Polymer Type:polypeptide(L)
Description:2,4-diacetylphloroglucinol biosynthesis protein PhlC
Chain IDs:C, F, I, L, O, R, U, X
Chain Length:398
Number of Molecules:8
Biological Source:Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SCY C CYS modified residue
Primary Citation
Structure and Catalytic Mechanism of a Bacterial Friedel-Crafts Acylase.
Chembiochem 20 88 95 (2019)
PMID: 30318713 DOI: 10.1002/cbic.201800462

Abstact

C-C bond-forming reactions are key transformations for setting up the carbon frameworks of organic compounds. In this context, Friedel-Crafts acylation is commonly used for the synthesis of aryl ketones, which are common motifs in many fine chemicals and natural products. A bacterial multicomponent acyltransferase from Pseudomonas protegens (PpATase) catalyzes such Friedel-Crafts C-acylation of phenolic substrates in aqueous solution, reaching up to >99 % conversion without the need for CoA-activated reagents. We determined X-ray crystal structures of the native and ligand-bound complexes. This multimeric enzyme consists of three subunits: PhlA, PhlB, and PhlC, arranged in a Phl(A2 C2)2 B4 composition. The structure of a reaction intermediate obtained from crystals soaked with the natural substrate 1-(2,4,6-trihydroxyphenyl)ethanone together with site-directed mutagenesis studies revealed that only residues from the PhlC subunits are involved in the acyl transfer reaction, with Cys88 very likely playing a significant role during catalysis. These structural and mechanistic insights form the basis of further enzyme engineering efforts directed towards enhancing the substrate scope of this enzyme.

Legend

Protein

Chemical

Disease

Primary Citation of related structures