5M9U image
Deposition Date 2016-11-02
Release Date 2017-07-26
Last Version Date 2024-11-06
Entry Detail
PDB ID:
5M9U
Title:
Spatial structure of antimicrobial peptide arenicin-1 mutant V8R
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Conformers Calculated:
200
Conformers Submitted:
20
Selection Criteria:
structures with the least restraint violations
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Arenicin-1
Mutations:V8R
Chain IDs:A
Chain Length:21
Number of Molecules:1
Biological Source:Arenicola marina
Ligand Molecules
Primary Citation
Dimerization of the antimicrobial peptide arenicin plays a key role in the cytotoxicity but not in the antibacterial activity.
Biochem. Biophys. Res. Commun. 482 1320 1326 (2017)
PMID: 27940358 DOI: 10.1016/j.bbrc.2016.12.035

Abstact

The β-hairpin antimicrobial peptides arenicins from marine polychaeta Arenicola marina exhibit a broad spectrum of antimicrobial activity and high cytotoxicity. In this study the biological activities of arenicin-1 and its therapeutically valuable analog Ar-1[V8R] were investigated. The peptide Ar-1[V8R] displays significantly reduced cytotoxicity against mammalian cells relative to the wild-type arenicin-1. At the same time, both peptides exhibit similar antibacterial activities and kinetics of bacterial membrane permeabilization. Comparative NMR analysis of the peptides spatial structures in water and membrane-mimicking environment showed that Ar-1[V8R] in contrast to arenicin has significantly lower dimerization propensity. Thus, dimerization of the antimicrobial peptide arenicin plays a key role in the cytotoxicity but not in the antibacterial activity.

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Primary Citation of related structures