5M94 image
Deposition Date 2016-10-31
Release Date 2016-12-21
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5M94
Title:
Crystal structure of Staphylococcus capitis divalent metal ion transporter (DMT) in complex with nanobody
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.10 Å
R-Value Free:
0.27
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Divalent metal cation transporter MntH
Chain IDs:A, C
Chain Length:415
Number of Molecules:2
Biological Source:Staphylococcus capitis
Polymer Type:polypeptide(L)
Molecule:CAMELID ANTIBODY FRAGMENT, NANOBODY
Chain IDs:B, D
Chain Length:123
Number of Molecules:2
Biological Source:Lama glama
Ligand Molecules
Primary Citation
Crystal structure of a SLC11 (NRAMP) transporter reveals the basis for transition-metal ion transport.
Nat. Struct. Mol. Biol. 21 990 996 (2014)
PMID: 25326704 DOI: 10.1038/nsmb.2904

Abstact

Members of the SLC11 (NRAMP) family transport iron and other transition-metal ions across cellular membranes. These membrane proteins are present in all kingdoms of life with a high degree of sequence conservation. To gain insight into the determinants of ion selectivity, we have determined the crystal structure of Staphylococcus capitis DMT (ScaDMT), a close prokaryotic homolog of the family. ScaDMT shows a familiar architecture that was previously identified in the amino acid permease LeuT. The protein adopts an inward-facing conformation with a substrate-binding site located in the center of the transporter. This site is composed of conserved residues, which coordinate Mn2+, Fe2+ and Cd2+ but not Ca2+. Mutations of interacting residues affect ion binding and transport in both ScaDMT and human DMT1. Our study thus reveals a conserved mechanism for transition-metal ion selectivity within the SLC11 family.

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Primary Citation of related structures