5M8D image
Entry Detail
PDB ID:
5M8D
Keywords:
Title:
Tubulin MTD265-R1 complex
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2016-10-28
Release Date:
2017-03-22
Method Details:
Experimental Method:
Resolution:
2.25 Å
R-Value Free:
0.20
R-Value Work:
0.16
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Tubulin alpha-1B chain
Chain IDs:A, C
Chain Length:451
Number of Molecules:2
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:Tubulin beta-2B chain
Chain IDs:B, D
Chain Length:445
Number of Molecules:2
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:Stathmin-4
Chain IDs:E
Chain Length:143
Number of Molecules:1
Biological Source:Rattus norvegicus
Polymer Type:polypeptide(L)
Description:Tubulin-Tyrosine Ligase
Chain IDs:F
Chain Length:384
Number of Molecules:1
Biological Source:Gallus gallus
Primary Citation
Deconvolution of Buparlisib's mechanism of action defines specific PI3K and tubulin inhibitors for therapeutic intervention.
Nat Commun 8 14683 14683 (2017)
PMID: 28276440 DOI: 10.1038/ncomms14683

Abstact

BKM120 (Buparlisib) is one of the most advanced phosphoinositide 3-kinase (PI3K) inhibitors for the treatment of cancer, but it interferes as an off-target effect with microtubule polymerization. Here, we developed two chemical derivatives that differ from BKM120 by only one atom. We show that these minute changes separate the dual activity of BKM120 into discrete PI3K and tubulin inhibitors. Analysis of the compounds cellular growth arrest phenotypes and microtubule dynamics suggest that the antiproliferative activity of BKM120 is mainly due to microtubule-dependent cytotoxicity rather than through inhibition of PI3K. Crystal structures of BKM120 and derivatives in complex with tubulin and PI3K provide insights into the selective mode of action of this class of drugs. Our results raise concerns over BKM120's generally accepted mode of action, and provide a unique mechanistic basis for next-generation PI3K inhibitors with improved safety profiles and flexibility for use in combination therapies.

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Primary Citation of related structures