ISDA

Deposition Date 2016-10-28

Release Date 2017-03-29

Last Version Date 2024-11-20

Entry Detail

PDB ID:

5M7T

Keywords:

HYDROLASE

Title:

Structure of human O-GlcNAc hydrolase with PugNAc type inhibitor

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.60 Å

R-Value Free:

0.23

R-Value Work:

0.20

R-Value Observed:

0.20

Space Group:

P 43 21 2

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Protein O-GlcNAcase
Gene (Uniprot):OGA
Chain IDs:A, B
Chain Length:916
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:O60502 Pfam ID:PF07555 EC:3.2.1.169

Ligand Molecules

GDV

Primary Citation

Structural and functional insight into human O-GlcNAcase.

Roth, C, Chan, S, Offen, W.A, Hemsworth, G.R, Willems, L.I, King, D.T, Varghese, V, Britton, R, Vocadlo, D.J, Davies, G.J.Show

Nat. Chem. Biol. 13 610 612 (2017)

PMID: 28346405 DOI: 10.1038/nchembio.2358

Abstact

O-GlcNAc hydrolase (OGA) removes O-linked N-acetylglucosamine (O-GlcNAc) from a myriad of nucleocytoplasmic proteins. Through co-expression and assembly of OGA fragments, we determined the three-dimensional structure of human OGA, revealing an unusual helix-exchanged dimer that lays a structural foundation for an improved understanding of substrate recognition and regulation of OGA. Structures of OGA in complex with a series of inhibitors define a precise blueprint for the design of inhibitors that have clinical value.

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Protein

Chemical

Disease

Primary Citation of related structures