5M5H image
Deposition Date 2016-10-21
Release Date 2016-12-14
Last Version Date 2024-05-08
Entry Detail
PDB ID:
5M5H
Title:
RIBOSOME-BOUND YIDC INSERTASE
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Membrane protein insertase YidC
Chain IDs:A
Chain Length:551
Number of Molecules:1
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
Structural Dynamics of the YidC:Ribosome Complex during Membrane Protein Biogenesis.
Cell Rep 17 2943 2954 (2016)
PMID: 27974208 DOI: 10.1016/j.celrep.2016.11.059

Abstact

Members of the YidC/Oxa1/Alb3 family universally facilitate membrane protein biogenesis, via mechanisms that have thus far remained unclear. Here, we investigated two crucial functional aspects: the interaction of YidC with ribosome:nascent chain complexes (RNCs) and the structural dynamics of RNC-bound YidC in nanodiscs. We observed that a fully exposed nascent transmembrane domain (TMD) is required for high-affinity YidC:RNC interactions, while weaker binding may already occur at earlier stages of translation. YidC efficiently catalyzed the membrane insertion of nascent TMDs in both fluid and gel phase membranes. Cryo-electron microscopy and fluorescence analysis revealed a conformational change in YidC upon nascent chain insertion: the essential TMDs 2 and 3 of YidC were tilted, while the amphipathic helix EH1 relocated into the hydrophobic core of the membrane. We suggest that EH1 serves as a mechanical lever, facilitating a coordinated movement of YidC TMDs to trigger the release of nascent chains into the membrane.

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Chemical

Disease

Primary Citation of related structures
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