5M3Z image
Deposition Date 2016-10-17
Release Date 2017-06-28
Last Version Date 2024-01-17
Entry Detail
PDB ID:
5M3Z
Keywords:
Title:
Crystal structure of Citrobacter freundii methionine gamma-lyase with C115H replacement in the complex with L-norleucine
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.45 Å
R-Value Free:
0.16
R-Value Work:
0.12
R-Value Observed:
0.13
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Methionine gamma-lyase
Gene (Uniprot):megL
Mutations:C115H
Chain IDs:A
Chain Length:398
Number of Molecules:1
Biological Source:Citrobacter freundii
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CSO A CYS modified residue
Primary Citation
Crystal structure of mutant form Cys115His of Citrobacter freundii methionine gamma-lyase complexed with l-norleucine.
Biochim. Biophys. Acta 1865 1123 1128 (2017)
PMID: 28602917 DOI: 10.1016/j.bbapap.2017.06.001

Abstact

The mutant form of Citrobacter freundii methionine γ-lyase with the replacement of active site Cys115 for His has been found to be inactive in the γ-elimination reaction of methionine while fully active in the γ-elimination reaction of O-acetyl-l-homoserine and in the β-elimination reaction of S-alk(en)yl-substituted cysteines. In this work, the crystal structure of the mutant enzyme complexed with competitive inhibitor, l-norleucine was determined at 1.45Å resolution. At the enzyme active site the inhibitor proved to be bound both noncovalently and covalently, which corresponds to the two intermediates of the γ- and β-elimination reactions, Michaelis complex and the external aldimine. Analysis of the structure allowed us to suggest the possible reason for the inability of the mutant enzyme to catalyze the physiological reaction.

Legend

Protein

Chemical

Disease

Primary Citation of related structures