5M2O image
Deposition Date 2016-10-13
Release Date 2017-07-05
Last Version Date 2024-01-17
Entry Detail
PDB ID:
5M2O
Keywords:
Title:
R. flavefaciens' third ScaB cohesin in complex with a group 1 dockerin
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.26 Å
R-Value Free:
0.15
R-Value Work:
0.13
R-Value Observed:
0.13
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative cellulosomal scaffoldin protein
Gene (Uniprot):scaB
Chain IDs:A
Chain Length:149
Number of Molecules:1
Biological Source:Ruminococcus flavefaciens FD-1
Polymer Type:polypeptide(L)
Molecule:Group I Dockerin
Chain IDs:B
Chain Length:96
Number of Molecules:1
Biological Source:Ruminococcus flavefaciens FD-1
Ligand Molecules
Primary Citation
Assembly of Ruminococcus flavefaciens cellulosome revealed by structures of two cohesin-dockerin complexes.
Sci Rep 7 759 759 (2017)
PMID: 28389644 DOI: 10.1038/s41598-017-00919-w

Abstact

Cellulosomes are sophisticated multi-enzymatic nanomachines produced by anaerobes to effectively deconstruct plant structural carbohydrates. Cellulosome assembly involves the binding of enzyme-borne dockerins (Doc) to repeated cohesin (Coh) modules located in a non-catalytic scaffoldin. Docs appended to cellulosomal enzymes generally present two similar Coh-binding interfaces supporting a dual-binding mode, which may confer increased positional adjustment of the different complex components. Ruminococcus flavefaciens' cellulosome is assembled from a repertoire of 223 Doc-containing proteins classified into 6 groups. Recent studies revealed that Docs of groups 3 and 6 are recruited to the cellulosome via a single-binding mode mechanism with an adaptor scaffoldin. To investigate the extent to which the single-binding mode contributes to the assembly of R. flavefaciens cellulosome, the structures of two group 1 Docs bound to Cohs of primary (ScaA) and adaptor (ScaB) scaffoldins were solved. The data revealed that group 1 Docs display a conserved mechanism of Coh recognition involving a single-binding mode. Therefore, in contrast to all cellulosomes described to date, the assembly of R. flavefaciens cellulosome involves single but not dual-binding mode Docs. Thus, this work reveals a novel mechanism of cellulosome assembly and challenges the ubiquitous implication of the dual-binding mode in the acquisition of cellulosome flexibility.

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Primary Citation of related structures