5M2G image
Entry Detail
PDB ID:
5M2G
Keywords:
Title:
PCE reductive dehalogenase from S. multivorans in complex with 2,4,6-tribromophenol
Biological Source:
PDB Version:
Deposition Date:
2016-10-12
Release Date:
2017-07-12
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.16
R-Value Work:
0.13
R-Value Observed:
0.13
Space Group:
P 41
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Tetrachloroethene reductive dehalogenase catalytically active subunit
Chain IDs:A, B
Chain Length:464
Number of Molecules:2
Biological Source:Sulfurospirillum multivorans
Primary Citation
Cobamide-mediated enzymatic reductive dehalogenation via long-range electron transfer.
Nat Commun 8 15858 15858 (2017)
PMID: 28671181 DOI: 10.1038/ncomms15858

Abstact

The capacity of metal-containing porphyrinoids to mediate reductive dehalogenation is implemented in cobamide-containing reductive dehalogenases (RDases), which serve as terminal reductases in organohalide-respiring microbes. RDases allow for the exploitation of halogenated compounds as electron acceptors. Their reaction mechanism is under debate. Here we report on substrate-enzyme interactions in a tetrachloroethene RDase (PceA) that also converts aryl halides. The shape of PceA's highly apolar active site directs binding of bromophenols at some distance from the cobalt and with the hydroxyl substituent towards the metal. A close cobalt-substrate interaction is not observed by electron paramagnetic resonance spectroscopy. Nonetheless, a halogen substituent para to the hydroxyl group is reductively eliminated and the path of the leaving halide is traced in the structure. Based on these findings, an enzymatic mechanism relying on a long-range electron transfer is concluded, which is without parallel in vitamin B12-dependent biochemistry and represents an effective mode of RDase catalysis.

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