5M00 image
Deposition Date 2016-10-03
Release Date 2017-12-20
Last Version Date 2024-11-06
Entry Detail
PDB ID:
5M00
Keywords:
IMMUNE SYSTEM
Title:
Crystal structure of murine P14 TCR complex with H-2Db and Y4A, modified gp33 peptide from LCMV
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.95 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
C 1 2 1
5M00 validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:H-2 class I histocompatibility antigen, D-B alpha chain
Gene (Uniprot):H2-D1
Chain IDs:A
Chain Length:276
Number of Molecules:1
Biological Source:Mus musculus
UniProt ID:P01899 Pfam ID:PF00129, PF07654
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2m
Chain IDs:B
Chain Length:119
Number of Molecules:1
Biological Source:Mus musculus
UniProt ID:P01887 Pfam ID:PF07654
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein Trav14-1,Uncharacterized protein
Gene (Uniprot):Trav14-1
Chain IDs:C (auth: G)
Chain Length:205
Number of Molecules:1
Biological Source:Mus musculus
UniProt ID:A0A0G2JF94,Q6PIR9 Pfam ID:PF07686, PF09291
Protein Blast
Polymer Type:polypeptide(L)
Molecule:T-cell receptor beta chain V region C5,Uncharacterized protein
Chain IDs:D (auth: H)
Chain Length:238
Number of Molecules:1
Biological Source:Mus musculus
UniProt ID:P04213,Q7TND8 Pfam ID:PF07686, PF07654
Polymer Type:polypeptide(L)
Molecule:LCMV-DERIVED GP33 ALTERED PEPTIDE LIGAND Y4A
Chain IDs:E (auth: P)
Chain Length:9
Number of Molecules:1
Biological Source:Mus musculus
Primary Citation
Thernary complexes of TCR P14 give insights into the mechanisms behind reestablishment of CTL responses against a viral escape mutant
To Be Published ? ? ? (?)
Primary Citation of related structures
5M00