5LZ2 image
Entry Detail
PDB ID:
5LZ2
Keywords:
Title:
Fragment-based inhibitors of Lipoprotein associated Phospholipase A2
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2016-09-29
Release Date:
2016-12-21
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.22
R-Value Work:
0.16
R-Value Observed:
0.17
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Platelet-activating factor acetylhydrolase
Chain IDs:A
Chain Length:388
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Fragment-Based Approach to the Development of an Orally Bioavailable Lactam Inhibitor of Lipoprotein-Associated Phospholipase A2 (Lp-PLA2).
J. Med. Chem. 59 10738 10749 (2016)
PMID: 27933945 DOI: 10.1021/acs.jmedchem.6b01427

Abstact

Lp-PLA2 has been explored as a target for a number of inflammation associated diseases, including cardiovascular disease and dementia. This article describes the discovery of a new fragment derived chemotype that interacts with the active site of Lp-PLA2. The starting fragment hit was discovered through an X-ray fragment screen and showed no activity in the bioassay (IC50 > 1 mM). The fragment hit was optimized using a variety of structure-based drug design techniques, including virtual screening, fragment merging, and improvement of shape complementarity. A novel series of Lp-PLA2 inhibitors was generated with low lipophilicity and a promising pharmacokinetic profile.

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Primary Citation of related structures