5LYI image
Entry Detail
PDB ID:
5LYI
Keywords:
HYDROLASE
Title:
Crystal structure of 1 in complex with tafCPB
Biological Source:
Source Organism:
Sus scrofa
Host Organism:
Komagataella pastoris CBS 7435
PDB Version:
Deposition Date:
2016-09-28
Release Date:
2016-10-26
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.64 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 41 21 2
5LYI validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Description:Carboxypeptidase B
Chain IDs:A
Chain Length:307
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:P09955 Pfam ID:PF00246 EC:3.4.17.2
Ligand Molecules
T4F
ZN
Primary Citation
Sulfamide as Zinc Binding Motif in Small Molecule Inhibitors of Activated Thrombin Activatable Fibrinolysis Inhibitor (TAFIa).
J. Med. Chem. 59 9567 9573 (2016)
PMID: 27749053 DOI: 10.1021/acs.jmedchem.6b01276

Abstact

Previously disclosed TAFIa inhibitors having a urea zinc-binding motif were used as the starting point for the development of a novel class of highly potent inhibitors having a sulfamide zinc-binding motif. High-resolution X-ray cocrystal structures were used to optimize the structures and reveal a highly unusual sulfamide configuration. A selected sulfamide was profiled in vitro and in vivo and displayed a promising ADMET profile.

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Protein

Chemical

Disease

Primary Citation of related structures
5LYL