5LWO image
Deposition Date 2016-09-18
Release Date 2017-03-08
Last Version Date 2024-04-03
Entry Detail
PDB ID:
5LWO
Keywords:
Title:
Structure of Spin-labelled T4 lysozyme mutant L115C-R119C-R1 at 100K
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.18 Å
R-Value Free:
0.16
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Endolysin
Gene (Uniprot):E
Mutations:C54T C97A L118C T115C R119C
Chain IDs:A
Chain Length:164
Number of Molecules:1
Biological Source:Enterobacteria phage T4
Primary Citation
Internal Dynamics of the 3-Pyrroline-N-Oxide Ring in Spin-Labeled Proteins.
J Phys Chem Lett 8 1113 1117 (2017)
PMID: 28221042 DOI: 10.1021/acs.jpclett.6b02971

Abstact

Site-directed spin labeling is a versatile tool to study structure as well as dynamics of proteins using EPR spectroscopy. Methanethiosulfonate (MTS) spin labels tethered through a disulfide linkage to an engineered cysteine residue were used in a large number of studies to extract structural as well as dynamic information on the protein from the rotational dynamics of the nitroxide moiety. The ring itself was always considered to be a rigid body. In this contribution, we present a combination of high-resolution X-ray crystallography and EPR spectroscopy of spin-labeled protein single crystals demonstrating that the nitroxide ring inverts fast at ambient temperature while exhibiting nonplanar conformations at low temperature. We have used quantum chemical calculations to explore the potential energy that determines the ring dynamics as well as the impact of the geometry on the magnetic parameters probed by EPR spectroscopy.

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Primary Citation of related structures