5LU9 image
Deposition Date 2016-09-08
Release Date 2017-03-29
Last Version Date 2024-10-16
Entry Detail
PDB ID:
5LU9
Keywords:
Title:
Crystal structure of YVAD-cmk bound human legumain (AEP) in complex with compound 11
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.27 Å
R-Value Free:
0.27
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 42
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Legumain
Gene (Uniprot):LGMN
Chain IDs:B (auth: A)
Chain Length:263
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:AC-TYR-VAL-ALA-ASP-CHLOROMETHYLKETONE
Chain IDs:A (auth: C)
Chain Length:6
Number of Molecules:1
Biological Source:synthetic construct
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SNN B ASP modified residue
Peptide-like Molecules
PRD_002086
Primary Citation
Inhibition of delta-secretase improves cognitive functions in mouse models of Alzheimer's disease.
Nat Commun 8 14740 14740 (2017)
PMID: 28345579 DOI: 10.1038/ncomms14740

Abstact

δ-secretase, also known as asparagine endopeptidase (AEP) or legumain, is a lysosomal cysteine protease that cleaves both amyloid precursor protein (APP) and tau, mediating the amyloid-β and tau pathology in Alzheimer's disease (AD). Here we report the therapeutic effect of an orally bioactive and brain permeable δ-secretase inhibitor in mouse models of AD. We performed a high-throughput screen and identified a non-toxic and selective δ-secretase inhibitor, termed compound 11, that specifically blocks δ-secretase but not other related cysteine proteases. Co-crystal structure analysis revealed a dual active site-directed and allosteric inhibition mode of this compound class. Chronic treatment of tau P301S and 5XFAD transgenic mice with this inhibitor reduces tau and APP cleavage, ameliorates synapse loss and augments long-term potentiation, resulting in protection of memory. Therefore, these findings demonstrate that this δ-secretase inhibitor may be an effective clinical therapeutic agent towards AD.

Legend

Protein

Chemical

Disease

Primary Citation of related structures