5LS8 image
Deposition Date 2016-08-22
Release Date 2018-01-17
Last Version Date 2024-01-10
Entry Detail
PDB ID:
5LS8
Keywords:
Title:
Light-activated ruthenium complex bound to a DNA quadruplex
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.78 Å
R-Value Free:
0.23
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 65
Macromolecular Entities
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*A)-3')
Chain IDs:A, B, C, D
Chain Length:8
Number of Molecules:4
Biological Source:synthetic construct
Primary Citation
Structural Studies Reveal Enantiospecific Recognition of a DNA G-Quadruplex by a Ruthenium Polypyridyl Complex.
Angew.Chem.Int.Ed.Engl. 58 9881 9885 (2019)
PMID: 30958918 DOI: 10.1002/anie.201814502

Abstact

By using X-ray crystallography, we show that the complexes Λ/Δ-[Ru(TAP)2 (11-CN-dppz)]2+ (TAP=1,4,5,8-tetraazaphenanthrene, dppz=dipyridophenazine) bind DNA G-quadruplex in an enantiospecific manner that parallels the specificity of these complexes with duplex DNA. The Λ complex crystallises with the normally parallel stranded d(TAGGGTTA) tetraplex to give the first such antiparallel strand assembly in which syn-guanosine is adjacent to the complex at the 5' end of the quadruplex core. SRCD measurements confirm that the same conformational switch occurs in solution. The Δ enantiomer, by contrast, is present in the structure but stacked at the ends of the assembly. In addition, we report the structure of Λ-[Ru(phen)2 (11-CN-dppz)]2+ bound to d(TCGGCGCCGA), a duplex-forming sequence, and use both structural models to provide insight into the motif-specific luminescence response of the isostructural phen analogue enantiomers.

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