5LS7 image
Deposition Date 2016-08-22
Release Date 2017-09-13
Last Version Date 2024-01-17
Entry Detail
PDB ID:
5LS7
Keywords:
Title:
Complex of wild type E. coli alpha aspartate decarboxylase with its processing factor PanZ
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.16 Å
R-Value Free:
0.13
R-Value Work:
0.11
R-Value Observed:
0.11
Space Group:
I 4
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Aspartate 1-decarboxylase
Gene (Uniprot):panD
Chain IDs:A
Chain Length:41
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Molecule:PanD maturation factor
Gene (Uniprot):panZ
Chain IDs:B
Chain Length:137
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Molecule:Aspartate 1-decarboxylase
Gene (Uniprot):panD
Chain IDs:C (auth: D)
Chain Length:102
Number of Molecules:1
Biological Source:Escherichia coli K-12
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CSO C CYS modified residue
PVO C SER modified residue
Primary Citation
The Mechanism of Regulation of Pantothenate Biosynthesis by the PanD-PanZAcCoA Complex Reveals an Additional Mode of Action for the Antimetabolite N-Pentyl Pantothenamide (N5-Pan).
Biochemistry 56 4931 4939 (2017)
PMID: 28832133 DOI: 10.1021/acs.biochem.7b00509

Abstact

The antimetabolite pentyl pantothenamide has broad spectrum antibiotic activity but exhibits enhanced activity against Escherichia coli. The PanDZ complex has been proposed to regulate the pantothenate biosynthetic pathway in E. coli by limiting the supply of β-alanine in response to coenzyme A concentration. We show that formation of such a complex between activated aspartate decarboxylase (PanD) and PanZ leads to sequestration of the pyruvoyl cofactor as a ketone hydrate and demonstrate that both PanZ overexpression-linked β-alanine auxotrophy and pentyl pantothenamide toxicity are due to formation of this complex. This both demonstrates that the PanDZ complex regulates pantothenate biosynthesis in a cellular context and validates the complex as a target for antibiotic development.

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Primary Citation of related structures