5LRF image
Deposition Date 2016-08-18
Release Date 2017-06-14
Last Version Date 2025-04-09
Entry Detail
PDB ID:
5LRF
Keywords:
Title:
Crystal structure of Glycogen Phosphorylase b in complex with KS389
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.75 Å
R-Value Free:
0.18
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Glycogen phosphorylase, muscle form
Gene (Uniprot):PYGM
Chain IDs:A
Chain Length:842
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Primary Citation
van der Waals interactions govern C-beta-d-glucopyranosyl triazoles' nM inhibitory potency in human liver glycogen phosphorylase.
J. Struct. Biol. 199 57 67 (2017)
PMID: 28483603 DOI: 10.1016/j.jsb.2017.05.001

Abstact

3-(C-Glucopyranosyl)-5aryl-1,2,4-triazoles with an aryl moiety larger than phenyl have been shown to have strong inhibitory potency (Ki values in the range of upper nM) for human liver glycogen phosphorylase (hlGP), a pharmacologically relevant target for diabetes type 2. In this study we investigate in a comparative manner the inhibitory effect of the above triazoles and their respective imidazoles on hlGPa. Kinetic studies show that the imidazole derivatives are 6-8 times more potent than their corresponding triazoles. We also seek to answer how the type of the aryl moiety affects the potency in hlGPa, and by determination of the crystal structure of rmGPb in complex with the triazole derivatives the structural basis of their inhibitory efficacy is also elucidated. Our studies revealed that the van der Waals interactions between the aryl moiety and residues in a hydrophobic pocket within the active site are mainly responsible for the variations in the potency of these inhibitors.

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