5LQQ image
Deposition Date 2016-08-17
Release Date 2016-12-28
Last Version Date 2024-10-16
Entry Detail
PDB ID:
5LQQ
Keywords:
Title:
Structure of Autotaxin (ENPP2) with LM350
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ectonucleotide pyrophosphatase/phosphodiesterase family member 2
Gene (Uniprot):Enpp2
Mutations:N410A, L581F, R591T, N806A
Chain IDs:A
Chain Length:827
Number of Molecules:1
Biological Source:Rattus norvegicus
Primary Citation
Structure-Activity Relationships of Small Molecule Autotaxin Inhibitors with a Discrete Binding Mode.
J. Med. Chem. 60 722 748 (2017)
PMID: 27982588 DOI: 10.1021/acs.jmedchem.6b01597

Abstact

Autotaxin (ATX) is a secreted enzyme responsible for the hydrolysis of lysophosphatidylcholine (LPC) to the bioactive lysophosphatidic acid (LPA) and choline. The ATX-LPA signaling pathway is implicated in cell survival, migration, and proliferation; thus, the inhibition of ATX is a recognized therapeutic target for a number of diseases including fibrotic diseases, cancer, and inflammation, among others. Many of the developed synthetic inhibitors for ATX have resembled the lipid chemotype of the native ligand; however, a small number of inhibitors have been described that deviate from this common scaffold. Herein, we report the structure-activity relationships (SAR) of a previously reported small molecule ATX inhibitor. We show through enzyme kinetics studies that analogues of this chemotype are noncompetitive inhibitors, and by using a crystal structure with ATX we confirm the discrete binding mode.

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