5LQ5 image
Entry Detail
PDB ID:
5LQ5
Title:
1.46 A resolution structure of PhnD1 from Prochlorococcus marinus (MIT 9301) in complex with phosphite
Biological Source:
PDB Version:
Deposition Date:
2016-08-16
Release Date:
2017-12-06
Method Details:
Experimental Method:
Resolution:
1.46 Å
R-Value Free:
0.18
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Putative phosphonate binding protein for ABC transporter
Chain IDs:A
Chain Length:282
Number of Molecules:1
Biological Source:Prochlorococcus marinus str. MIT 9301
Ligand Molecules
Primary Citation
The molecular basis of phosphite and hypophosphite recognition by ABC-transporters.
Nat Commun 8 1746 1746 (2017)
PMID: 29170493 DOI: 10.1038/s41467-017-01226-8

Abstact

Inorganic phosphate is the major bioavailable form of the essential nutrient phosphorus. However, the concentration of phosphate in most natural habitats is low enough to limit microbial growth. Under phosphate-depleted conditions some bacteria utilise phosphite and hypophosphite as alternative sources of phosphorus, but the molecular basis of reduced phosphorus acquisition from the environment is not fully understood. Here, we present crystal structures and ligand binding affinities of periplasmic binding proteins from bacterial phosphite and hypophosphite ATP-binding cassette transporters. We reveal that phosphite and hypophosphite specificity results from a combination of steric selection and the presence of a P-H…π interaction between the ligand and a conserved aromatic residue in the ligand-binding pocket. The characterisation of high affinity and specific transporters has implications for the marine phosphorus redox cycle, and might aid the use of phosphite as an alternative phosphorus source in biotechnological, industrial and agricultural applications.

Legend

Protein

Chemical

Disease

Primary Citation of related structures