5LOD image
Deposition Date 2016-08-09
Release Date 2017-08-16
Last Version Date 2024-01-10
Entry Detail
PDB ID:
5LOD
Keywords:
Title:
Crystal structure of HhaI DNA methyltransferase in APO form
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Modification methylase HhaI
Gene (Uniprot):hhaIM
Chain IDs:A (auth: B), B (auth: A)
Chain Length:327
Number of Molecules:2
Biological Source:Haemophilus parahaemolyticus
Ligand Molecules
Primary Citation
Inhibition studies of DNA methyltransferases by maleimide derivatives of RG108 as non-nucleoside inhibitors.
Future Med Chem 9 1465 1481 (2017)
PMID: 28795598 DOI: 10.4155/fmc-2017-0074

Abstact

AIM DNA methyltransferases (DNMTs) are important drug targets for epigenetic therapy of cancer. Nowadays, non-nucleoside DNMT inhibitors are in development to address high toxicity of nucleoside analogs. However, these compounds still have low activity in cancer cells and mode of action of these compounds remains unclear. MATERIALS & METHODS In this work, we studied maleimide derivatives of RG108 by biochemical, structural and computational approaches to highlight their inhibition mechanism on DNMTs. RESULTS Findings demonstrated a correlation between cytotoxicity on mesothelioma cells of these compounds and their inhibitory potency against DNMTs. Noncovalent and covalent docking studies, supported by crystallographic (apo structure of M.HhaI) and differential scanning fluorimetry assays, provided detailed insights into their mode of action and revealed essential residues for the stabilization of such compounds inside DNMTs. [Formula: see text].

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Primary Citation of related structures