5LLI image
Deposition Date 2016-07-27
Release Date 2016-11-09
Last Version Date 2024-10-09
Entry Detail
PDB ID:
5LLI
Keywords:
Title:
pVHL:EloB:EloC in complex with VH298
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 41 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Transcription elongation factor B polypeptide 2
Gene (Uniprot):ELOB
Chain IDs:A, D, G, J
Chain Length:104
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Transcription elongation factor B polypeptide 1
Gene (Uniprot):ELOC
Chain IDs:B, E, H, K
Chain Length:97
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Von Hippel-Lindau disease tumor suppressor
Gene (Uniprot):VHL
Chain IDs:C, F, I, L
Chain Length:162
Number of Molecules:4
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CAS A CYS modified residue
Ligand Molecules
Primary Citation
Potent and selective chemical probe of hypoxic signalling downstream of HIF-alpha hydroxylation via VHL inhibition.
Nat Commun 7 13312 13312 (2016)
PMID: 27811928 DOI: 10.1038/ncomms13312

Abstact

Chemical strategies to using small molecules to stimulate hypoxia inducible factors (HIFs) activity and trigger a hypoxic response under normoxic conditions, such as iron chelators and inhibitors of prolyl hydroxylase domain (PHD) enzymes, have broad-spectrum activities and off-target effects. Here we disclose VH298, a potent VHL inhibitor that stabilizes HIF-α and elicits a hypoxic response via a different mechanism, that is the blockade of the VHL:HIF-α protein-protein interaction downstream of HIF-α hydroxylation by PHD enzymes. We show that VH298 engages with high affinity and specificity with VHL as its only major cellular target, leading to selective on-target accumulation of hydroxylated HIF-α in a concentration- and time-dependent fashion in different cell lines, with subsequent upregulation of HIF-target genes at both mRNA and protein levels. VH298 represents a high-quality chemical probe of the HIF signalling cascade and an attractive starting point to the development of potential new therapeutics targeting hypoxia signalling.

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Primary Citation of related structures