5LKC image
Deposition Date 2016-07-22
Release Date 2017-05-24
Last Version Date 2024-01-10
Entry Detail
PDB ID:
5LKC
Keywords:
Title:
Protruding domain of GII.17 norovirus Kawasaki308 in complex with HBGA type A (triglycan)
Biological Source:
Source Organism:
Norovirus GII (Taxon ID: 122929)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.81 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Major capsid protein
Chain IDs:A, B
Chain Length:308
Number of Molecules:2
Biological Source:Norovirus GII
Primary Citation
Human norovirus inhibition by a human milk oligosaccharide.
Virology 508 81 89 (2017)
PMID: 28505592 DOI: 10.1016/j.virol.2017.04.032

Abstact

Human noroviruses are the leading cause of outbreaks of acute gastroenteritis. Norovirus interactions with histo-blood group antigens (HBGAs) are known to be important for an infection. In this study, we identified the HBGA binding pocket for an emerging GII genotype 17 (GII.17) variant using X-ray crystallography. The GII.17 variant bound the HBGA with an equivalent set of residues as the leading pandemic GII.4 variants. These structural data highlights the conserved nature of HBGA binding site between prevalent GII noroviruses. Noroviruses also interact with human milk oligosaccharides (HMOs), which mimic HBGAs and may function as receptor decoys. We previously showed that HMOs inhibited the binding of rarely detected GII.10 norovirus to HBGAs. We now found that an HMO, 2'-fucosyllactose (2'FL), additionally blocked both the GI.1 and GII.17 noroviruses from binding to HBGAs. Together, these findings provide evidence that 2'FL might function as a broadly reactive antiviral against multiple norovirus genogroups.

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