ISDA

Deposition Date 2016-07-17

Release Date 2016-08-31

Last Version Date 2024-05-08

Entry Detail

PDB ID:

5LJ0

Keywords:

TRANSCRIPTION

Title:

Crystal structure of human ATAD2 bromodomain in complex with 8-(((3R,4R,5S)-3-((4,4-difluorocyclohexyl)methoxy)-5-methoxypiperidin-4-yl)amino)-3-methyl-5-(5-methylpyridin-3-yl)-1,7-naphthyridin-2(1H)-one

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.82 Å

R-Value Free:

0.18

R-Value Work:

0.17

R-Value Observed:

0.17

Space Group:

P 65 2 2

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:ATPase family AAA domain-containing protein 2
Gene (Uniprot):ATAD2
Chain IDs:A
Chain Length:130
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q6PL18 Pfam ID:PF00439

Ligand Molecules

6XX

EDO

SO4

Primary Citation

A Chemical Probe for the ATAD2 Bromodomain.

Bamborough, P, Chung, C.W, Demont, E.H, Furze, R.C, Bannister, A.J, Che, K.H, Diallo, H, Douault, C, Grandi, P, Kouzarides, T, Michon, A.M, Mitchell, D.J, Prinjha, R.K, Rau, C, Robson, S, Sheppard, R.J, Upton, R, Watson, R.J.Show

Angew.Chem.Int.Ed.Engl. 55 11382 11386 (2016)

PMID: 27530368 DOI: 10.1002/anie.201603928

Abstact

ATAD2 is a cancer-associated protein whose bromodomain has been described as among the least druggable of that target class. Starting from a potent lead, permeability and selectivity were improved through a dual approach: 1) using CF2 as a sulfone bio-isostere to exploit the unique properties of fluorine, and 2) using 1,3-interactions to control the conformation of a piperidine ring. This resulted in the first reported low-nanomolar, selective and cell permeable chemical probe for ATAD2.

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Primary Citation of related structures