5LGD image
Deposition Date 2016-07-06
Release Date 2016-08-31
Last Version Date 2024-11-06
Entry Detail
PDB ID:
5LGD
Keywords:
Title:
The CIDRa domain from MCvar1 PfEMP1 bound to CD36
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.07 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Platelet glycoprotein 4
Gene (Uniprot):CD36
Chain IDs:A
Chain Length:472
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:PfEMP1 variant 1 of strain MC
Gene (Uniprot):MCvar-1 PfEMP1
Chain IDs:B
Chain Length:179
Number of Molecules:1
Biological Source:Plasmodium falciparum
Primary Citation
The structural basis for CD36 binding by the malaria parasite.
Nat Commun 7 12837 12837 (2016)
PMID: 27667267 DOI: 10.1038/ncomms12837

Abstact

CD36 is a scavenger receptor involved in fatty acid metabolism, innate immunity and angiogenesis. It interacts with lipoprotein particles and facilitates uptake of long chain fatty acids. It is also the most common target of the PfEMP1 proteins of the malaria parasite, Plasmodium falciparum, tethering parasite-infected erythrocytes to endothelial receptors. This prevents their destruction by splenic clearance and allows increased parasitaemia. Here we describe the structure of CD36 in complex with long chain fatty acids and a CD36-binding PfEMP1 protein domain. A conserved hydrophobic pocket allows the hugely diverse PfEMP1 protein family to bind to a conserved phenylalanine residue at the membrane distal tip of CD36. This phenylalanine is also required for CD36 to interact with lipoprotein particles. By targeting a site on CD36 that is required for its physiological function, PfEMP1 proteins maintain the ability to tether to the endothelium and avoid splenic clearance.

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Primary Citation of related structures