5LFS image
Entry Detail
PDB ID:
5LFS
Keywords:
Title:
Lambda-[Ru(bpy)2(dppz)]2+ bound to brominated DNA
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2016-07-04
Release Date:
2017-02-15
Method Details:
Experimental Method:
Resolution:
1.85 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 64 2 2
Macromolecular Entities
Polymer Type:polydeoxyribonucleotide
Description:DNA (5'-D(*GP*CP*CP*G)-3')
Chain IDs:A
Chain Length:4
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Description:DNA (5'-D(*(CBR)P*GP*GP*C)-3')
Chain IDs:B (auth: C)
Chain Length:4
Number of Molecules:1
Biological Source:synthetic construct
Primary Citation
Guanine Can Direct Binding Specificity of Ru-dipyridophenazine (dppz) Complexes to DNA through Steric Effects.
Chemistry 23 4981 4985 (2017)
PMID: 28105682 DOI: 10.1002/chem.201605508

Abstact

X-ray crystal structures of three Λ-[Ru(L)2 dppz]2+ complexes (dppz=dipyridophenazine; L=1,10-phenanthroline (phen), 2,2'-bipyridine (bpy)) bound to d((5BrC)GGC/GCCG) showed the compounds intercalated at a 5'-CG-3' step. The compounds bind through canted intercalation, with the binding angle determined by the guanine NH2 group, in contrast to symmetrical intercalation previously observed at 5'-TA-3' sites. This result suggests that canted intercalation is preferred at 5'-CG-3' sites even though the site itself is symmetrical, and we hypothesise that symmetrical intercalation in a 5'-CG-3' step could give rise to a longer luminescence lifetime than canted intercalation.

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