5LFG image
Deposition Date 2016-07-01
Release Date 2017-08-09
Last Version Date 2024-10-16
Entry Detail
PDB ID:
5LFG
Title:
X-ray structure of a new fully ligated carbomonoxy form of Trematomus newnesi hemoglobin (Hb1TnCO).
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.94 Å
R-Value Free:
0.24
R-Value Work:
0.18
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemoglobin subunit alpha-1
Gene (Uniprot):hba1
Chain IDs:A, C
Chain Length:143
Number of Molecules:2
Biological Source:Trematomus newnesi
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemoglobin subunit beta-1/2
Chain IDs:B, D
Chain Length:146
Number of Molecules:2
Biological Source:Trematomus newnesi
Primary Citation
Fine Sampling of the RT Quaternary-Structure Transition of a Tetrameric Hemoglobin.
Chemistry 23 605 613 (2017)
PMID: 27808442 DOI: 10.1002/chem.201603421

Abstact

Although the end points of the functional transitions of tetrameric hemoglobins (Hbs) have been well characterized, atomic-resolution data on R-T intermediate states are extremely limited. Herein, the X-ray structures of two independent tetramers of the fully ligated carbomonoxy form of Trematomus newnesi hemoglobin (Hb1Tn) within the same crystal are described. These structures show peculiar features in the heme pocket, EF corner, and tertiary/quaternary structure. Distal histidine side chains have a propensity to swing out of the heme pocket and thus allow compression of the EF corner. In this rotameric state, the distal His group does not interact with the CO ligand, consistent with FTIR spectra recorded in solution. At the quaternary-structure level, one tetramer is an intermediate R-T state, whereas the other assumes a T-like structure. Altogether, the structures of these tetramers provide the best available atomic-level picture of the R→T transition of vertebrate Hbs.

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