5LDF image
Deposition Date 2016-06-25
Release Date 2016-08-10
Last Version Date 2024-05-15
Entry Detail
PDB ID:
5LDF
Keywords:
Title:
Maltose binding protein genetically fused to dodecameric glutamine synthetase
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
6.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Glutamine synthetase
Gene (Uniprot):glnA
Mutations:Deletion of residues 1-2
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L
Chain Length:466
Number of Molecules:12
Biological Source:Salmonella typhi
Polymer Type:polypeptide(L)
Molecule:Maltose-binding periplasmic protein
Gene (Uniprot):malE
Chain IDs:M, N, O, P, Q, R, S, T, U, V, W, X
Chain Length:370
Number of Molecules:12
Biological Source:Escherichia coli O157:H7
Ligand Molecules
Peptide-like Molecules
PRD_900001
Primary Citation
Fusion to a homo-oligomeric scaffold allows cryo-EM analysis of a small protein.
Sci Rep 6 30909 30909 (2016)
PMID: 27485862 DOI: 10.1038/srep30909

Abstact

Recent technical advances have revolutionized the field of cryo-electron microscopy (cryo-EM). However, most monomeric proteins remain too small (<100 kDa) for cryo-EM analysis. To overcome this limitation, we explored a strategy whereby a monomeric target protein is genetically fused to a homo-oligomeric scaffold protein and the junction optimized to allow the target to adopt the scaffold symmetry, thereby generating a chimeric particle suitable for cryo-EM. To demonstrate the concept, we fused maltose-binding protein (MBP), a 40 kDa monomer, to glutamine synthetase, a dodecamer formed by two hexameric rings. Chimeric constructs with different junction lengths were screened by biophysical analysis and negative-stain EM. The optimal construct yielded a cryo-EM reconstruction that revealed the MBP structure at sub-nanometre resolution. These findings illustrate the feasibility of using homo-oligomeric scaffolds to enable cryo-EM analysis of monomeric proteins, paving the way for applying this strategy to challenging structures resistant to crystallographic and NMR analysis.

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Primary Citation of related structures