5LCW image
Deposition Date 2016-06-22
Release Date 2016-08-10
Last Version Date 2024-10-09
Entry Detail
PDB ID:
5LCW
Keywords:
Title:
Cryo-EM structure of the Anaphase-promoting complex/Cyclosome, in complex with the Mitotic checkpoint complex (APC/C-MCC) at 4.2 angstrom resolution
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex subunit 1
Gene (Uniprot):ANAPC1
Chain IDs:A
Chain Length:1944
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex subunit 11
Gene (Uniprot):ANAPC11
Chain IDs:B
Chain Length:84
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Cell division cycle protein 23 homolog
Gene (Uniprot):CDC23
Chain IDs:C, P
Chain Length:597
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex subunit 15
Gene (Uniprot):ANAPC15
Chain IDs:D
Chain Length:121
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex subunit 16
Gene (Uniprot):ANAPC16
Chain IDs:E
Chain Length:110
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Cell division cycle protein 27 homolog
Gene (Uniprot):CDC27
Chain IDs:F, H
Chain Length:824
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex subunit CDC26
Gene (Uniprot):CDC26
Chain IDs:G, T (auth: W)
Chain Length:85
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex subunit 4
Gene (Uniprot):ANAPC4
Chain IDs:I
Chain Length:808
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Cell division cycle protein 16 homolog
Gene (Uniprot):CDC16
Chain IDs:J, K
Chain Length:620
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex subunit 10
Gene (Uniprot):ANAPC10
Chain IDs:L
Chain Length:185
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex subunit 13
Gene (Uniprot):ANAPC13
Chain IDs:M
Chain Length:74
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex subunit 2
Gene (Uniprot):ANAPC2
Chain IDs:N
Chain Length:822
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex subunit 5
Gene (Uniprot):ANAPC5
Chain IDs:O
Chain Length:755
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Cell division cycle protein 20 homolog
Gene (Uniprot):CDC20
Chain IDs:Q
Chain Length:374
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Cell division cycle protein 20 homolog
Gene (Uniprot):CDC20
Chain IDs:R
Chain Length:499
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Mitotic checkpoint serine/threonine-protein kinase BUB1 beta,Mitotic checkpoint serine/threonine-protein kinase BUB1 beta
Gene (Uniprot):BUB1B
Chain IDs:S
Chain Length:342
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex subunit 7
Gene (Uniprot):ANAPC7
Chain IDs:U (auth: X), V (auth: Y)
Chain Length:599
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Mitotic spindle assembly checkpoint protein MAD2A
Gene (Uniprot):MAD2L1
Chain IDs:W (auth: Z)
Chain Length:205
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Molecular basis of APC/C regulation by the spindle assembly checkpoint.
Nature 536 431 436 (2016)
PMID: 27509861 DOI: 10.1038/nature19083

Abstact

In the dividing eukaryotic cell, the spindle assembly checkpoint (SAC) ensures that each daughter cell inherits an identical set of chromosomes. The SAC coordinates the correct attachment of sister chromatid kinetochores to the mitotic spindle with activation of the anaphase-promoting complex (APC/C), the E3 ubiquitin ligase responsible for initiating chromosome separation. In response to unattached kinetochores, the SAC generates the mitotic checkpoint complex (MCC), which inhibits the APC/C and delays chromosome segregation. By cryo-electron microscopy, here we determine the near-atomic resolution structure of a human APC/C–MCC complex (APC/C(MCC)). Degron-like sequences of the MCC subunit BubR1 block degron recognition sites on Cdc20, the APC/C coactivator subunit responsible for substrate interactions. BubR1 also obstructs binding of the initiating E2 enzyme UbcH10 to repress APC/C ubiquitination activity. Conformational variability of the complex enables UbcH10 association, and structural analysis shows how the Cdc20 subunit intrinsic to the MCC (Cdc20(MCC)) is ubiquitinated, a process that results in APC/C reactivation when the SAC is silenced.

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Primary Citation of related structures