5LCH image
Deposition Date 2016-06-21
Release Date 2017-02-15
Last Version Date 2024-01-10
Entry Detail
PDB ID:
5LCH
Keywords:
Title:
VIM-2 metallo-beta-lactamase in complex with (S)-1-allyl-2-(3-methoxyphenyl)-3-oxoisoindoline-4-carboxylic acid (compound 42)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.94 Å
R-Value Free:
0.16
R-Value Work:
0.12
R-Value Observed:
0.12
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Metallo-beta-lactamase VIM-2
Gene (Uniprot):blaVIM-2
Chain IDs:A
Chain Length:266
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa
Primary Citation
NMR-filtered virtual screening leads to non-metal chelating metallo-beta-lactamase inhibitors.
Chem Sci 8 928 937 (2017)
PMID: 28451231 DOI: 10.1039/c6sc04524c

Abstact

There are no clinically useful inhibitors of metallo-β-lactamases (MBLs), which are a growing problem because they hydrolyse almost all β-lactam antibacterials. Inhibition by most reported MBL inhibitors involves zinc ion chelation. A structure-based virtual screening approach combined with NMR filtering led to the identification of inhibitors of the clinically relevant Verona Integron-encoded MBL (VIM)-2. Crystallographic analyses reveal a new mode of MBL inhibition involving binding adjacent to the active site zinc ions, but which does not involve metal chelation. The results will aid efforts to develop new types of clinically useful inhibitors targeting MBLs/MBL-fold metallo-enzymes involved in antibacterial and anticancer drug resistance.

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Primary Citation of related structures