5LBR image
Deposition Date 2016-06-17
Release Date 2016-10-26
Last Version Date 2024-11-06
Entry Detail
PDB ID:
5LBR
Keywords:
Title:
Wild-type PAS-GAF fragment from Deinococcus radiodurans Bphp collected at SACLA
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.20
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Bacteriophytochrome
Gene (Uniprot):bphP
Chain IDs:A
Chain Length:343
Number of Molecules:1
Biological Source:Deinococcus radiodurans
Primary Citation

Abstact

Phytochromes are a family of photoreceptors that control light responses of plants, fungi and bacteria. A sequence of structural changes, which is not yet fully understood, leads to activation of an output domain. Time-resolved serial femtosecond crystallography (SFX) can potentially shine light on these conformational changes. Here we report the room temperature crystal structure of the chromophore-binding domains of the Deinococcus radiodurans phytochrome at 2.1 Å resolution. The structure was obtained by serial femtosecond X-ray crystallography from microcrystals at an X-ray free electron laser. We find overall good agreement compared to a crystal structure at 1.35 Å resolution derived from conventional crystallography at cryogenic temperatures, which we also report here. The thioether linkage between chromophore and protein is subject to positional ambiguity at the synchrotron, but is fully resolved with SFX. The study paves the way for time-resolved structural investigations of the phytochrome photocycle with time-resolved SFX.

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Primary Citation of related structures