5LA3 image
Entry Detail
PDB ID:
5LA3
Keywords:
Title:
[FeFe]-hydrogenase CpI from Clostridium pasteurianum, variant E279A
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2016-06-13
Release Date:
2017-06-21
Method Details:
Experimental Method:
Resolution:
2.29 Å
R-Value Free:
0.21
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Iron hydrogenase 1
Mutations:E279A
Chain IDs:A, B
Chain Length:583
Number of Molecules:2
Biological Source:Clostridium pasteurianum
Primary Citation
Accumulating the hydride state in the catalytic cycle of [FeFe]-hydrogenases.
Nat Commun 8 16115 16115 (2017)
PMID: 28722011 DOI: 10.1038/ncomms16115

Abstact

H2 turnover at the [FeFe]-hydrogenase cofactor (H-cluster) is assumed to follow a reversible heterolytic mechanism, first yielding a proton and a hydrido-species which again is double-oxidized to release another proton. Three of the four presumed catalytic intermediates (Hox, Hred/Hred and Hsred) were characterized, using various spectroscopic techniques. However, in catalytically active enzyme, the state containing the hydrido-species, which is eponymous for the proposed heterolytic mechanism, has yet only been speculated about. We use different strategies to trap and spectroscopically characterize this transient hydride state (Hhyd) for three wild-type [FeFe]-hydrogenases. Applying a novel set-up for real-time attenuated total-reflection Fourier-transform infrared spectroscopy, we monitor compositional changes in the state-specific infrared signatures of [FeFe]-hydrogenases, varying buffer pH and gas composition. We selectively enrich the equilibrium concentration of Hhyd, applying Le Chatelier's principle by simultaneously increasing substrate and product concentrations (H2/H+). Site-directed manipulation, targeting either the proton-transfer pathway or the adt ligand, significantly enhances Hhyd accumulation independent of pH.

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